English

Reaction kinetics in the few-encounter limit

Statistical Mechanics 2019-11-22 v2 Mathematical Physics math.MP

Abstract

The classical theory of chemical reactions can be understood in terms of diffusive barrier crossing, where the rate of a reaction is determined by the inverse of the mean first passage time (FPT) to cross a free energy barrier. Whenever a few reaction events suffice to trigger a response or the energy barriers are not high, the mean first passage time alone does not suffice to characterize the kinetics, i.e., the kinetics do not occur on a single time-scale. Instead, the full statistics of the FPT are required. We present a spectral representation of the FPT statistics that allows us to understand and accurately determine FPT distributions over several orders of magnitudes in time. A canonical narrowing of the first passage density is shown to emerge whenever several molecules are searching for the same target, which was termed the 'few-encounter limit'. The few-encounter limit is essential in all situations, in which already the first encounter triggers a response, such as misfolding-triggered aggregation of proteins or protein transcription regulation.

Keywords

Cite

@article{arxiv.1901.09815,
  title  = {Reaction kinetics in the few-encounter limit},
  author = {David Hartich and Aljaz Godec},
  journal= {arXiv preprint arXiv:1901.09815},
  year   = {2019}
}

Comments

16 pages, 5 figures, Chapter 11 in "Chemical Kinetics Beyond the Textbook" edited by K. Lindenberg, R. Metzler, Gleb Oshanin (World Scientific, 2019)

R2 v1 2026-06-23T07:24:22.023Z