English

Random Matrix approach to collective behavior and bulk universality in protein dynamics

Quantitative Methods 2013-05-29 v2 Statistical Mechanics Biological Physics

Abstract

Covariance matrices of amino acid displacements, commonly used to characterize the large-scale movements of proteins, are investigated through the prism of Random Matrix Theory. Bulk universality is detected in the local spacing statistics of noise-dressed eigenmodes, which is well described by a Brody distribution with parameter β0.8\beta\simeq 0.8. This finding, supported by other consistent indicators, implies a novel quantitative criterion to single out the collective degrees of freedom of the protein from the majority of high-energy, localized vibrations.

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Cite

@article{arxiv.0907.5164,
  title  = {Random Matrix approach to collective behavior and bulk universality in protein dynamics},
  author = {Raffaello Potestio and Fabio Caccioli and Pierpaolo Vivo},
  journal= {arXiv preprint arXiv:0907.5164},
  year   = {2013}
}

Comments

4 pages, 7 figures