Random Matrix approach to collective behavior and bulk universality in protein dynamics
Quantitative Methods
2013-05-29 v2 Statistical Mechanics
Biological Physics
Abstract
Covariance matrices of amino acid displacements, commonly used to characterize the large-scale movements of proteins, are investigated through the prism of Random Matrix Theory. Bulk universality is detected in the local spacing statistics of noise-dressed eigenmodes, which is well described by a Brody distribution with parameter . This finding, supported by other consistent indicators, implies a novel quantitative criterion to single out the collective degrees of freedom of the protein from the majority of high-energy, localized vibrations.
Keywords
Cite
@article{arxiv.0907.5164,
title = {Random Matrix approach to collective behavior and bulk universality in protein dynamics},
author = {Raffaello Potestio and Fabio Caccioli and Pierpaolo Vivo},
journal= {arXiv preprint arXiv:0907.5164},
year = {2013}
}
Comments
4 pages, 7 figures