$r$-indexing Wheeler graphs
Data Structures and Algorithms
2021-02-01 v1
Abstract
Let be a Wheeler graph and be the number of runs in a Burrows-Wheeler Transform of , and suppose can be decomposed into edge-disjoint directed paths whose internal vertices each have in- and out-degree exactly 1. We show how to store in space such that later, given a pattern , in time we can count the vertices of reachable by directed paths labelled , and then report those vertices in time per vertex.
Keywords
Cite
@article{arxiv.2101.12341,
title = {$r$-indexing Wheeler graphs},
author = {Travis Gagie},
journal= {arXiv preprint arXiv:2101.12341},
year = {2021}
}