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Py-oopsi: the python implementation of the fast-oopsi algorithm

Computational Engineering, Finance, and Science 2014-05-26 v1
Authors: Benyuan Liu
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Abstract

Fast-oopsi was developed by Joshua Vogelstein in 2009, which is now widely used to extract neuron spike activities from calcium fluorescence signals. Here, we propose detailed implementation of the fast-oopsi algorithm in python programming language. Some corrections are also made to the original fast-oopsi paper.

Cite

@article{arxiv.1405.6181,
  title  = {Py-oopsi: the python implementation of the fast-oopsi algorithm},
  author = {Benyuan Liu},
  journal= {arXiv preprint arXiv:1405.6181},
  year   = {2014}
}

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