English

Pseudoknot RNA structures with arc-length $\ge 4$

Combinatorics 2008-07-04 v2

Abstract

In this paper we study kk-noncrossing RNA structures with minimum arc-length 4 and at most k1k-1 mutually crossing bonds. Let Tk[4](n){\sf T}_{k}^{[4]}(n) denote the number of kk-noncrossing RNA structures with arc-length 4\ge 4 over nn vertices. We prove (a) a functional equation for the generating function n0Tk[4](n)zn\sum_{n\ge 0}{\sf T}_{k}^{[4]}(n)z^n and (b) derive for k9k\le 9 the asymptotic formula Tk[4](n)ckn((k1)2+(k1)/2)γkn{\sf T}_{k}^{[4]}(n)\sim c_k n^{-((k-1)^2+(k-1)/2)} \gamma_k^{-n}. Furthermore we explicitly compute the exponential growth rates γk1\gamma_k^{-1} and asymptotic formulas for 4k94\le k\le 9.

Cite

@article{arxiv.0803.1399,
  title  = {Pseudoknot RNA structures with arc-length $\ge 4$},
  author = {Hillary S. W. Han and Christian M. Reidys},
  journal= {arXiv preprint arXiv:0803.1399},
  year   = {2008}
}

Comments

18 pages; 3 figures

R2 v1 2026-06-21T10:20:09.353Z