We study the detectability of circular polarization in a stochastic gravitational wave background from various sources such as supermassive black hole binaries, cosmic strings, and inflation in the early universe with pulsar timing arrays. We calculate generalized overlap reduction functions for the circularly polarized stochastic gravitational wave background. We find that the circular polarization can not be detected for an isotropic background. However, there is a chance to observe the circular polarization for an anisotropic gravitational wave background. We also show how to separate polarized gravitational waves from unpolarized gravitational waves.