PRISM: Exploring Heterogeneous Pretrained EEG Foundation Model Transfer to Clinical Differential Diagnosis
Abstract
EEG foundation models are typically pretrained on narrow-source clinical archives and evaluated on benchmarks from the same ecosystem, leaving unclear whether representations encode neural physiology or recording-distribution artifacts. We introduce PRISM (Population Representative Invariant Signal Model), a masked autoencoder ablated along two axes -- pretraining population and downstream adaptation -- with architecture and preprocessing fixed. We compare a narrow-source EU/US corpus (TUH + PhysioNet) against a geographically diverse pool augmented with multi-center South Asian clinical recordings across multiple EEG systems. Three findings emerge. First, narrow-source pretraining yields stronger linear probes on distribution-matched benchmarks, while diverse pretraining produces more adaptable representations under fine-tuning -- a trade-off invisible under single-protocol evaluation. Trained on three source corpora, PRISM matches or outperforms REVE (92 datasets, 60,000+ hours) on the majority of tasks, demonstrating that targeted diversity can substitute for indiscriminate scale and that dataset count is a confounding variable in model comparison. Second, on a clinically challenging and previously untested task -- distinguishing epilepsy from diagnostic mimickers via interictal EEG -- the diverse checkpoint outperforms the narrow-source checkpoint by +12.3 pp balanced accuracy, the largest gap across all evaluations. Third, systematic inconsistencies between EEG-Bench and EEG-FM-Bench reverse model rankings on identical datasets by up to 24 pp; we identify six concrete sources including split construction, checkpoint selection, segment length, and normalization, showing these factors compound non-additively.
Keywords
Cite
@article{arxiv.2603.02268,
title = {PRISM: Exploring Heterogeneous Pretrained EEG Foundation Model Transfer to Clinical Differential Diagnosis},
author = {Jeet Bandhu Lahiri and Parshva Runwal and Arvasu Kulkarni and Mahir Jain and Aditya Ray Mishra and Siddharth Panwar and Sandeep Singh},
journal= {arXiv preprint arXiv:2603.02268},
year = {2026}
}
Comments
14 pages, 1 figure, 5 tables