Poisson PCA for matrix count data
Abstract
We develop a dimension reduction framework for data consisting of matrices of counts. Our model is based on assuming the existence of a small amount of independent normal latent variables that drive the dependency structure of the observed data, and can be seen as the exact discrete analogue for a contaminated low-rank matrix normal model. We derive estimators for the model parameters and establish their root- consistency. An extension of a recent proposal from the literature is used to estimate the latent dimension of the model. Additionally, a sparsity-accommodating variant of the model is considered. The method is shown to surpass both its vectorization-based competitors and matrix methods assuming the continuity of the data distribution in analysing simulated data and real abundance data.
Cite
@article{arxiv.2110.14420,
title = {Poisson PCA for matrix count data},
author = {Joni Virta and Andreas Artemiou},
journal= {arXiv preprint arXiv:2110.14420},
year = {2021}
}
Comments
19 pages, 7 figures