English

Phase separation and single-chain compactness of charged disordered proteins are strongly correlated

Biomolecules 2022-01-11 v4

Abstract

Liquid-liquid phase separation of intrinsically disordered proteins (IDPs) is a major undergirding factor in the regulated formation of membraneless organelles in the cell. The phase behavior of an IDP is sensitive to its amino acid sequence. Here we apply a recent random-phase-approximation polymer theory to investigate how the tendency for multiple chains of a protein to phase separate, as characterized by the critical temperature TcrT^*_{\rm cr}, is related to the protein's single-chain average radius of gyration Rg\langle R_{\rm g} \rangle. For a set of sequences containing different permutations of an equal number of positively and negatively charged residues, we found a striking correlation TcrRgγT^*_{\rm cr}\sim \langle R_{\rm g} \rangle^{-\gamma} with γ\gamma as large as 6.0\sim 6.0, indicating that electrostatic effects have similarly significant impact on promoting single-chain conformational compactness and phase separation. Moreover, TcrSCDT^*_{\rm cr}\propto -{\rm SCD}, where SCD is a recently proposed "sequence charge decoration" parameter determined solely by sequence information. Ramifications of our findings for deciphering the sequence dependence of IDP phase separation are discussed.

Keywords

Cite

@article{arxiv.1703.02725,
  title  = {Phase separation and single-chain compactness of charged disordered proteins are strongly correlated},
  author = {Yi-Hsuan Lin and Hue Sun Chan},
  journal= {arXiv preprint arXiv:1703.02725},
  year   = {2022}
}

Comments

4 page, 3 figures, accepted for publication in Biophysical Journal as a Letter