English

Optimal metabolic pathway activation

Quantitative Methods 2008-01-17 v1 Optimization and Control Molecular Networks

Abstract

This paper deals with temporal enzyme distribution in the activation of biochemical pathways. Pathway activation arises when production of a certain biomolecule is required due to changing environmental conditions. Under the premise that biological systems have been optimized through evolutionary processes, a biologically meaningful optimal control problem is posed. In this setup, the enzyme concentrations are assumed to be time dependent and constrained by a limited overall enzyme production capacity, while the optimization criterion accounts for both time and resource usage. Using geometric arguments we establish the bang-bang nature of the solution and reveal that each reaction must be sequentially activated in the same order as they appear in the pathway. The results hold for a broad range of enzyme dynamics which includes, but is not limited to, Mass Action, Michaelis-Menten and Hill Equation kinetics.

Keywords

Cite

@article{arxiv.0801.2447,
  title  = {Optimal metabolic pathway activation},
  author = {Diego Oyarzún and Brian Ingalls and Richard Middleton and Dimitrios Kalamatianos},
  journal= {arXiv preprint arXiv:0801.2447},
  year   = {2008}
}

Comments

14 pages, 3 figures. Paper to be presented at the 17th IFAC World Congress, Seoul, Korea, July 2008

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