English

On phase diagram and the pseudogap state in a linear chiral homopolymer model

Soft Condensed Matter 2015-12-25 v3 High Energy Physics - Lattice High Energy Physics - Theory Biological Physics Biomolecules

Abstract

The phase structure of a homopolymer chain is investigated in terms of a universal theoretical model, designed to describe the infrared limit of slow spatial variations. The effects of chirality are studied and compared with the influence of a short-range attractive interaction between monomers, at various ambient temperature values. In the high temperature limit the homopolymer chain is in the self-avoiding random walk phase. But at low temperatures, two different phases are possible: When short-range attractive interactions dominate over chirality, the chain collapses into a space- filling conformation. But when the attractive interactions become weaker, there is a low temperature unfolding transition and the chain becomes like a straight rod. Between the high temperature and low temperature limits, several intermediate states are observed. For sufficiently high values of short-range attraction, the conventional {\theta}-regime is observed between the self-avoiding random walk phase and the space filling collapsed phase. But when chirality increases, there is a trasition from the {\theta}-regime to a pseudogap state. Moreover, a regime akin the {\theta}-regime is identified between the pseudogap state, and the low temperature phase where the chain is like a straight rod. Applications to polymers and proteins, in particular collagen, are suggested.

Keywords

Cite

@article{arxiv.1501.05267,
  title  = {On phase diagram and the pseudogap state in a linear chiral homopolymer model},
  author = {A. Sinelnikova and A. J. Niemi and M. Ulybyshev},
  journal= {arXiv preprint arXiv:1501.05267},
  year   = {2015}
}

Comments

Journal version of the paper, published in Phys. Rev. E