On a conjecture of compatibility of multi-states characters
Data Structures and Algorithms
2011-05-06 v1 Populations and Evolution
Abstract
Perfect phylogeny consisting of determining the compatibility of a set of characters is known to be NP-complete. We propose in this article a conjecture on the necessary and sufficient conditions of compatibility: Given a set of -states full characters, there exists a function such that is compatible iff every set of characters of is compatible. Some previous work showed that , and . Gusfield et al. 09 conjectured that for any . In this paper, we present an example showing that and then a closure operation for chordal sandwich graphs. The later problem is a common approach of perfect phylogeny. This operation can be the first step to simplify the problem before solving some particular cases , and determining the function .
Keywords
Cite
@article{arxiv.1105.1109,
title = {On a conjecture of compatibility of multi-states characters},
author = {Michel Habib and Thu-Hien To},
journal= {arXiv preprint arXiv:1105.1109},
year = {2011}
}