English

Non-Monotone Response Modules and Cascades from the EML Operator for Reduced Models of Biological Dynamics

Dynamical Systems 2026-05-06 v1 Biological Physics Quantitative Methods

Abstract

Standard saturating response functions, such as the Hill function, are monotone and therefore cannot represent recruitment-induced overshoot or adaptive transients with a single block. Reproducing such non-monotone responses from saturating primitives requires at least a difference of two blocks with opposing amplitudes, doubling the static-block parameter count. Here, building on a recent mathematical result that a single binary operator, EML, generates all standard elementary functions, we use EML as a structured grammar for reduced nonlinear ODEs. This yields an activation-suppression module that captures overshoot directly. We validate the framework in three settings. First, on PKA-R relocalization data, the EML grammar discovers a reduced surrogate consistent with established mechanistic biology. Second, on Rho-GTPase recruitment data, an exhaustive search over EML expression trees selects the same compositional form across all four perturbation-response traces. Third, a 50-state simulated network is compressed by an EML cascade acting as a fixed temporal basis. Thus we demonstrate the power and potential of EML for reduced models of biological dynamics.

Keywords

Cite

@article{arxiv.2605.02972,
  title  = {Non-Monotone Response Modules and Cascades from the EML Operator for Reduced Models of Biological Dynamics},
  author = {Amir Erez},
  journal= {arXiv preprint arXiv:2605.02972},
  year   = {2026}
}

Comments

Main text: 9 pages, 4 figures. Appendix is 5 pages