MONI can find k-MEMs
Data Structures and Algorithms
2022-12-22 v4
Abstract
Suppose we are asked to index a text such that, given a pattern , we can quickly report the maximal substrings of that each occur in at least times. We first show how we can add bits to Rossi et al.'s recent MONI index, where is the number of runs in the Burrows-Wheeler Transform of , such that it supports such queries in time. We then show how, if we are given at construction time, we can reduce the query time to .
Keywords
Cite
@article{arxiv.2202.05085,
title = {MONI can find k-MEMs},
author = {Igor Tatarnikov and Ardavan Shahrabi Farahani and Sana Kashgouli and Travis Gagie},
journal= {arXiv preprint arXiv:2202.05085},
year = {2022}
}