Metropolis Importance Sampling for Rugged Dynamical Variables
Soft Condensed Matter
2009-11-07 v2 Statistical Mechanics
Abstract
A funnel transformation is introduced, which acts recursively from higher towards lower temperatures. It biases the a-priori probabilities of a canonical or generalized ensemble Metropolis simulation, so that they zoom in on the global energy minimum, if a funnel exists indeed. A first, crude approximation to the full transformation, called rugged Metropolis one (RM), is tested for Met-Enkephalin. At 300K the computational gain is a factor of two and, due to its simplicity, RM is well suited to replace the conventional Metropolis updating for these kind of systems.
Cite
@article{arxiv.cond-mat/0209413,
title = {Metropolis Importance Sampling for Rugged Dynamical Variables},
author = {Bernd A. Berg},
journal= {arXiv preprint arXiv:cond-mat/0209413},
year = {2009}
}
Comments
4 pages RevTex, 2 figures, 1 table. Revised after referee repots, 400K acceptance rates corrected