English

Metrics for classes of semi-binary phylogenetic networks using $\mu$-representations

Populations and Evolution 2025-07-30 v3 Combinatorics

Abstract

Phylogenetic networks are useful in representing the evolutionary history of taxa. In certain scenarios, one requires a way to compare different networks. In practice, this can be rather difficult, except within specific classes of networks. In this paper, we derive metrics for the class of \emph{orchard networks} and the class of \emph{strongly reticulation-visible} networks, from variants of so-called \emph{μ\mu-representations}, which are vector representations of networks. For both network classes, we impose degree constraints on the vertices, by considering \emph{semi-binary} networks.

Keywords

Cite

@article{arxiv.2412.05107,
  title  = {Metrics for classes of semi-binary phylogenetic networks using $\mu$-representations},
  author = {Christopher Reichling and Leo van Iersel and Yukihiro Murakami},
  journal= {arXiv preprint arXiv:2412.05107},
  year   = {2025}
}

Comments

31 pages, 16 figures

R2 v1 2026-06-28T20:25:44.376Z