English

Maximum-entropy calculation of end-to-end distance distribution of force stretching chains

Soft Condensed Matter 2009-11-07 v1

Abstract

Using the maximum-entropy method, we calculate the end-to-end distance distribution of the force stretched chain from the moments of the distribution, which can be obtained from the extension-force curves recorded in single-molecule experiments. If one knows force expansion of the extension through the (n1)(n-1)th power of force, it is enough information to calculate the nn moments of the distribution. We examine the method with three force stretching chain models, Gaussian chain, free-joined chain and excluded-volume chain on two-dimension lattice. The method reconstructs all distributions precisely. We also apply the method to force stretching complex chain molecules: the hairpin and secondary structure conformations. We find that the distributions of homogeneous chains of two conformations are very different: there are two independent peaks in hairpin distribution; while only one peak is observed in the distribution of secondary structure conformations. Our discussion also shows that the end-to-end distance distribution may discover more critical physical information than the simpler extension-force curves can give.

Keywords

Cite

@article{arxiv.cond-mat/0212270,
  title  = {Maximum-entropy calculation of end-to-end distance distribution of force stretching chains},
  author = {Luru Dai and Fei Liu and Zhong-can Ou-Yang},
  journal= {arXiv preprint arXiv:cond-mat/0212270},
  year   = {2009}
}

Comments

13 pages, 14 figures