English

Maximizing a Submodular Function with Viability Constraints

Data Structures and Algorithms 2016-11-18 v1

Abstract

We study the problem of maximizing a monotone submodular function with viability constraints. This problem originates from computational biology, where we are given a phylogenetic tree over a set of species and a directed graph, the so-called food web, encoding viability constraints between these species. These food webs usually have constant {depth}. The goal is to select a subset of kk species that satisfies the viability constraints and has maximal phylogenetic diversity. As this problem is known to be NP-hard, we investigate approximation algorithms. We present the first constant factor approximation algorithm if the depth is constant. Its approximation ratio is (11e)(1-\frac{1}{\sqrt{e}}). This algorithm not only applies to phylogenetic trees with viability constraints but for arbitrary monotone submodular set functions with viability constraints. Second, we show that there is no (11/e+ϵ)(1-1/e+\epsilon)-approximation algorithm for our problem setting (even for additive functions) and that there is no approximation algorithm for a slight extension of this setting.

Keywords

Cite

@article{arxiv.1611.05753,
  title  = {Maximizing a Submodular Function with Viability Constraints},
  author = {Wolfgang Dvořák and Monika Henzinger and David P. Williamson},
  journal= {arXiv preprint arXiv:1611.05753},
  year   = {2016}
}

Comments

in Algorithmica (2015)