M$^3$Prune: Hierarchical Collaborative Pruning for Efficient Multi-Modal Multi-Agent Retrieval-Augmented Generation

Recent advances in multi-modal retrieval-augmented generation (mRAG), which augments multi-modal large language models (MLLMs) with external knowledge, have shown that collective intelligence from multiple agents can outperform a single model through effective communication. Despite their strong performance, existing multi-agent systems incur substantial token overhead and computational cost, posing challenges for large-scale deployment. To address these issues, we propose a Multi-Modal Multi-agent hierarchical communication graph PRUNING framework, termed M3Prune. M3Prune eliminates redundant communication edges both across and within modalities, improving the trade-off between task performance and token overhead. Specifically, M3Prune first performs intra-modal graph sparsification in the textual and visual modalities to identify task-critical communication links. It then constructs an inter-modal communication graph and sparsifies cross-modal connections while encouraging consistent cross-modal reasoning through a modality alignment score. Finally, it progressively prunes redundant edges to obtain an efficient hierarchical topology. Extensive experiments on both general-domain and domain-specific mRAG benchmarks show that M3Prune consistently outperforms single-agent and strong multi-agent mRAG systems while signifi- cantly improving token efficiency.