English

Localization of positive charge in DNA induced by its interaction with environment

Soft Condensed Matter 2008-06-06 v3

Abstract

Microscopic mechanisms of positive charge transfer in DNA remain unclear. A quantum state of electron hole in DNA is determined by the competition of the pi-stacking interaction bb sharing a charge between different base pairs and the interaction λ\lambda with the local environment which attempts to trap charge. To determine which interaction dominates we investigated charge quantum states in various (GC)n(GC)_{n} sequences choosing DNA parameters satisfying experimental data for the balance of charge transfer rates G+Gn+G^{+} \leftrightarrow G_{n}^{+}, n=2,3n=2,3 \cite{FredMain}. We show that experimental data can be consistent with theory only assuming bλb\ll \lambda meaning that charge is typically localized within the single GG site. Consequently any DNA sequence including the one consisting of identical base pairs behaves more like an insulating material then a molecular conductor. Our theory can be verified experimentally, for instance measuring balance of charge transfer reactions G+Gn+G^{+} \leftrightarrow G_{n}^{+}, n4n \geq 4 and comparing the experimental results with our predictions.

Keywords

Cite

@article{arxiv.0803.2266,
  title  = {Localization of positive charge in DNA induced by its interaction with environment},
  author = {Dmitry B. Uskov and Alexander L. Burin},
  journal= {arXiv preprint arXiv:0803.2266},
  year   = {2008}
}

Comments

Submitted to the Journal of Chemical Physics