Classifying fine-grained ischemic stroke phenotypes relies on identifying important clinical information. Radiology reports provide relevant information with context to determine such phenotype information. We focus on stroke phenotypes with location-specific information: brain region affected, laterality, stroke stage, and lacunarity. We use an existing fine-grained spatial information extraction system--Rad-SpatialNet--to identify clinically important information and apply simple domain rules on the extracted information to classify phenotypes. The performance of our proposed approach is promising (recall of 89.62% for classifying brain region and 74.11% for classifying brain region, side, and stroke stage together). Our work demonstrates that an information extraction system based on a fine-grained schema can be utilized to determine complex phenotypes with the inclusion of simple domain rules. These phenotypes have the potential to facilitate stroke research focusing on post-stroke outcome and treatment planning based on the stroke location.
@article{arxiv.2010.05096,
title = {Leveraging Spatial Information in Radiology Reports for Ischemic Stroke Phenotyping},
author = {Surabhi Datta and Shekhar Khanpara and Roy F. Riascos and Kirk Roberts},
journal= {arXiv preprint arXiv:2010.05096},
year = {2020}
}