English

inlabru: software for fitting latent Gaussian models with non-linear predictors

Methodology 2024-07-02 v1 Computation

Abstract

The integrated nested Laplace approximation (INLA) method has become a popular approach for computationally efficient approximate Bayesian computation. In particular, by leveraging sparsity in random effect precision matrices, INLA is commonly used in spatial and spatio-temporal applications. However, the speed of INLA comes at the cost of restricting the user to the family of latent Gaussian models and the likelihoods currently implemented in {INLA}, the main software implementation of the INLA methodology. {inlabru} is a software package that extends the types of models that can be fitted using INLA by allowing the latent predictor to be non-linear in its parameters, moving beyond the additive linear predictor framework to allow more complex functional relationships. For inference it uses an approximate iterative method based on the first-order Taylor expansion of the non-linear predictor, fitting the model using INLA for each linearised model configuration. {inlabru} automates much of the workflow required to fit models using {R-INLA}, simplifying the process for users to specify, fit and predict from models. There is additional support for fitting joint likelihood models by building each likelihood individually. {inlabru} also supports the direct use of spatial data structures, such as those implemented in the {sf} and {terra} packages. In this paper we outline the statistical theory, model structure and basic syntax required for users to understand and develop their own models using {inlabru}. We evaluate the approximate inference method using a Bayesian method checking approach. We provide three examples modelling simulated spatial data that demonstrate the benefits of the additional flexibility provided by {inlabru}.

Keywords

Cite

@article{arxiv.2407.00791,
  title  = {inlabru: software for fitting latent Gaussian models with non-linear predictors},
  author = {Finn Lindgren and Fabian Bachl and Janine Illian and Man Ho Suen and Håvard Rue and Andrew E. Seaton},
  journal= {arXiv preprint arXiv:2407.00791},
  year   = {2024}
}
R2 v1 2026-06-28T17:24:11.099Z