English

Influence of pigment-protein coupling on excitation energy transfer in FMO complex

Biological Physics 2018-01-26 v3 Chemical Physics Quantum Physics

Abstract

To explain experimentally observed oscillatory dynamics of highly efficient process of excitation energy transfer (EET) in Fenna-Matthews-Olson (FMO) complex, most theoretical models assume the same local protein environment around all the bacteriochlorophyll-a (BChla) sites, contradictory to the structural analysis of FMO complex. Using different values of pigment-protein couplings for different BChla sites, measured in the adiabatic limit of electron transfer, we theoretically investigate the effect of inhomogeneous local protein environment on excitation energy transfer. By employing non-Markovian master equation we demonstrate that the asymmetric system-bath coupling leads to the results consistent with the experimental observations. Quantum dynamical simulation suggests that the correlated fuctuations preserve the oscillation of excitation for long time-scales. Further different BChla sites have asymmetric time-scales of oscillations of excitation due to in-homogeneous pigment-protein couplings also.

Keywords

Cite

@article{arxiv.1605.00920,
  title  = {Influence of pigment-protein coupling on excitation energy transfer in FMO complex},
  author = {Davinder Singh and Shubhrangshu Dasgupta},
  journal= {arXiv preprint arXiv:1605.00920},
  year   = {2018}
}

Comments

More realistic protein environment is considered in article by authors, available on arXiv:1708.00920