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Improved Approximability Result for Test Set with Small Redundancy

Data Structures and Algorithms 2007-09-27 v4 Computational Complexity

Abstract

Test set with redundancy is one of the focuses in recent bioinformatics research. Set cover greedy algorithm (SGA for short) is a commonly used algorithm for test set with redundancy. This paper proves that the approximation ratio of SGA can be (212r)lnn+3/2lnr+O(lnlnn)(2-\frac{1}{2r})\ln n+{3/2}\ln r+O(\ln\ln n) by using the potential function technique. This result is better than the approximation ratio 2lnn2\ln n which directly derives from set multicover, when r=o(lnnlnlnn)r=o(\frac{\ln n}{\ln\ln n}), and is an extension of the approximability results for plain test set.

Keywords

Cite

@article{arxiv.0705.2503,
  title  = {Improved Approximability Result for Test Set with Small Redundancy},
  author = {Peng Cui},
  journal= {arXiv preprint arXiv:0705.2503},
  year   = {2007}
}
R2 v1 2026-06-21T08:29:14.765Z