Hydration Dynamics and IR Spectroscopy of 4-Fluorophenol
Abstract
Halogenated groups are relevant in pharmaceutical applications and potentially useful spectroscopic probes for infrared spectroscopy. In this work, the structural dynamics and infrared spectroscopy of -fluorophenol (F-PhOH) and phenol (PhOH) is investigated in the gas phase and in water using a combination of experiment and molecular dynamics (MD) simulations. The gas phase and solvent dynamics around F-PhOH and PhOH is characterized from atomistic simulations using empirical energy functions with point charges or multipoles for the electrostatics, Machine-Learning (ML) based parametrization and with full (QM) and mixed Quantum Mechanical/Molecular Mechanics (QM/MM) simulations with a particular focus on the CF- and OH-stretch region. The CF-stretch band is heavily mixed with other modes whereas the OH-stretch in solution displays a characteristic high-frequency peak around 3600 cm most likely associated with the -OH group of PhOH and F-PhOH together with a characteristic progression below 3000 cm due to coupling with water modes which is also reproduced by several of the simulations. Solvent and radial distribution functions indicate that the CF-site is largely hydrophobic except for simulations using point charges which renders them unsuited for correctly describing hydration and dynamics around fluorinated sites.
Keywords
Cite
@article{arxiv.2206.10463,
title = {Hydration Dynamics and IR Spectroscopy of 4-Fluorophenol},
author = {Seyedeh Maryam Salehi and Silvan Käser and Kai Töpfer and Polydefkis Diamantis and Rolf Pfister and Peter Hamm and Ursula Röthlisberger and Markus Meuwly},
journal= {arXiv preprint arXiv:2206.10463},
year = {2022}
}
Comments
Main Manuscript: 41 pages and 6 figures, SI: 10 pages and 10 figures