English

Hybrid OpenMP/MPI programs for solving the time-dependent Gross-Pitaevskii equation in a fully anisotropic trap

Quantum Gases 2016-01-19 v1 Mathematical Physics math.MP Pattern Formation and Solitons Computational Physics Quantum Physics

Abstract

We present hybrid OpenMP/MPI (Open Multi-Processing/Message Passing Interface) parallelized versions of earlier published C programs (D. Vudragovic et al., Comput. Phys. Commun. 183, 2021 (2012)) for calculating both stationary and non-stationary solutions of the time-dependent Gross-Pitaevskii (GP) equation in three spatial dimensions. The GP equation describes the properties of dilute Bose-Einstein condensates at ultra-cold temperatures. Hybrid versions of programs use the same algorithms as the C ones, involving real- and imaginary-time propagation based on a split-step Crank-Nicolson method, but consider only a fully-anisotropic three-dimensional GP equation, where algorithmic complexity for large grid sizes necessitates parallelization in order to reduce execution time and/or memory requirements per node. Since distributed memory approach is required to address the latter, we combine MPI programing paradigm with existing OpenMP codes, thus creating fully flexible parallelism within a combined distributed/shared memory model, suitable for different modern computer architectures. The two presented C/OpenMP/MPI programs for real- and imaginary-time propagation are optimized and accompanied by a customizable makefile. We present typical scalability results for the provided OpenMP/MPI codes and demonstrate almost linear speedup until inter-process communication time starts to dominate over calculation time per iteration. Such a scalability study is necessary for large grid sizes in order to determine optimal number of MPI nodes and OpenMP threads per node.

Keywords

Cite

@article{arxiv.1601.04641,
  title  = {Hybrid OpenMP/MPI programs for solving the time-dependent Gross-Pitaevskii equation in a fully anisotropic trap},
  author = {Bogdan Sataric and Vladimir Slavnic and Aleksandar Belic and Antun Balaz and Paulsamy Muruganandam and Sadhan K. Adhikari},
  journal= {arXiv preprint arXiv:1601.04641},
  year   = {2016}
}

Comments

8 pages, 4 figures; to download the programs, click other formats and download the source