Heading in the right direction? Using head moves to traverse phylogenetic network space
Abstract
Head moves are a type of rearrangement moves for phylogenetic networks. They have mostly been studied as part of more encompassing types of moves, such as rSPR moves. Here, we study head moves as a type of moves on themselves. We show that the tiers () of phylogenetic network space are connected by local head moves. Then we show tail moves and head moves are closely related: sequences of tail moves can be converted to sequences of head moves and vice versa, changing the length by at most a constant factor. Because the tiers of network space are connected by rSPR moves, this gives a second proof of the connectivity of these tiers. Furthermore, we show that these tiers have small diameter by reproving the connectivity a third time. As the head move neighbourhood is in general small, this makes head moves a good candidate for local search heuristics. Finally we prove that finding the shortest sequence of head moves between two networks is NP-hard.
Cite
@article{arxiv.1810.09795,
title = {Heading in the right direction? Using head moves to traverse phylogenetic network space},
author = {Remie Janssen},
journal= {arXiv preprint arXiv:1810.09795},
year = {2018}
}
Comments
39 pages, 27 figures