English

Graph-Facilitated Resonant Mode Counting in Stochastic Interaction Networks

Molecular Networks 2017-03-01 v1 Biological Physics

Abstract

Oscillations in a stochastic dynamical system, whose deterministic counterpart has a stable steady state, are a widely reported phenomenon. Traditional methods of finding parameter regimes for stochastically-driven resonances are, however, cumbersome for any but the smallest networks. In this letter we show by example of the Brusselator how to use real root counting algorithms and graph theoretic tools to efficiently determine the number of resonant modes and parameter ranges for stochastic oscillations. We argue that stochastic resonance is a network property by showing that resonant modes only depend on the squared Jacobian matrix J2J^2 , unlike deterministic oscillations which are determined by JJ. By using graph theoretic tools, analysis of stochastic behaviour for larger networks is simplified and chemical reaction networks with multiple resonant modes can be identified easily.

Keywords

Cite

@article{arxiv.1702.08747,
  title  = {Graph-Facilitated Resonant Mode Counting in Stochastic Interaction Networks},
  author = {Michael F Adamer and Thomas E Woolley and Heather A Harrington},
  journal= {arXiv preprint arXiv:1702.08747},
  year   = {2017}
}

Comments

5 pages, 4 figures

R2 v1 2026-06-22T18:30:44.335Z