Artificial Intelligence · Computer Science
Hybrid Genetic Algorithm and Lasso Test Approach for Inferring Well Supported Phylogenetic Trees based on Subsets of Chloroplastic Core Genes
Bassam AlKindy, Christophe Guyeux, Jean-François Couchot, Michel Salomon +2
2015-04-21
Populations and Evolution · Quantitative Biology
Computing the probability of gene trees concordant with the species tree in the multispecies coalescent
Jakub Truszkowski, Celine Scornavacca, Fabio Pardi
2020-12-11
Populations and Evolution · Quantitative Biology
The tree reconstruction game: phylogenetic reconstruction using reinforcement learning
Dana Azouri, Oz Granit, Michael Alburquerque, Yishay Mansour +2
2023-03-14
Neural and Evolutionary Computing · Computer Science
Runtime phylogenetic analysis enables extreme subsampling for test-based problems
Alexander Lalejini, Marcos Sanson, Jack Garbus, Matthew Andres Moreno +1
2024-02-05
Populations and Evolution · Quantitative Biology
PhyloGen: Language Model-Enhanced Phylogenetic Inference via Graph Structure Generation
ChenRui Duan, Zelin Zang, Siyuan Li, Yongjie Xu +1
2024-12-30
Populations and Evolution · Quantitative Biology
Estimating phylogenetic trees from genome-scale data
Liang Liu, Zhenxiang Xi, Shaoyuan Wu, Charles Davis +1
2015-09-11
Genomics · Quantitative Biology
Improved Core Genes Prediction for Constructing well-supported Phylogenetic Trees in large sets of Plant Species
Bassam AlKindy, Huda Al-Nayyef, Christophe Guyeux, Jean-François Couchot +2
2015-04-24
Populations and Evolution · Quantitative Biology
Using genotype abundance to improve phylogenetic inference
William S. DeWitt, Luka Mesin, Gabriel D. Victora, Vladimir N. Minin +1
2018-04-09
Artificial Intelligence · Computer Science
Binary Particle Swarm Optimization versus Hybrid Genetic Algorithm for Inferring Well Supported Phylogenetic Trees
Bassam AlKindy, Bashar Al-Nuaimi, Christophe Guyeux, Jean-François Couchot +3
2016-09-01
Quantum Physics · Physics
Inference of maximum parsimony phylogenetic trees with model-based classical and quantum methods
Jiawei Zhang, Yibo Chen, Yang Zhou, Jun-Han Huang
2026-04-20
Machine Learning · Statistics
GENESIM: genetic extraction of a single, interpretable model
Gilles Vandewiele, Olivier Janssens, Femke Ongenae, Filip De Turck +1
2016-11-18
Populations and Evolution · Quantitative Biology
Well-supported phylogenies using largest subsets of core-genes by discrete particle swarm optimization
Reem Alsrraj, Bassam AlKindy, Christophe Guyeux, Laurent Philippe +1
2017-06-28
Quantitative Methods · Quantitative Biology
Estimation of cell lineage trees by maximum-likelihood phylogenetics
Jean Feng, William S DeWitt, Aaron McKenna, Noah Simon +2
2019-04-02
Data Structures and Algorithms · Computer Science
Constructing a Consensus Phylogeny from a Leaf-Removal Distance
Cedric Chauve, Mark Jones, Manuel Lafond, Céline Scornavacca +1
2019-07-10
Populations and Evolution · Quantitative Biology
Construction of Gene and Species Trees from Sequence Data incl. Orthologs, Paralogs, and Xenologs
Marc Hellmuth, Nicolas Wieseke
2016-02-29