English

Generative Model for Synthesizing Ionizable Lipids: A Monte Carlo Tree Search Approach

Machine Learning 2024-12-03 v1 Artificial Intelligence Biomolecules Quantitative Methods

Abstract

Ionizable lipids are essential in developing lipid nanoparticles (LNPs) for effective messenger RNA (mRNA) delivery. While traditional methods for designing new ionizable lipids are typically time-consuming, deep generative models have emerged as a powerful solution, significantly accelerating the molecular discovery process. However, a practical challenge arises as the molecular structures generated can often be difficult or infeasible to synthesize. This project explores Monte Carlo tree search (MCTS)-based generative models for synthesizable ionizable lipids. Leveraging a synthetically accessible lipid building block dataset and two specialized predictors to guide the search through chemical space, we introduce a policy network guided MCTS generative model capable of producing new ionizable lipids with available synthesis pathways.

Keywords

Cite

@article{arxiv.2412.00807,
  title  = {Generative Model for Synthesizing Ionizable Lipids: A Monte Carlo Tree Search Approach},
  author = {Jingyi Zhao and Yuxuan Ou and Austin Tripp and Morteza Rasoulianboroujeni and José Miguel Hernández-Lobato},
  journal= {arXiv preprint arXiv:2412.00807},
  year   = {2024}
}