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Gene Ontology (GO) Prediction using Machine Learning Methods

Machine Learning 2019-09-27 v2 Computational Engineering, Finance, and Science Quantitative Methods Machine Learning

Abstract

We applied machine learning to predict whether a gene is involved in axon regeneration. We extracted 31 features from different databases and trained five machine learning models. Our optimal model, a Random Forest Classifier with 50 submodels, yielded a test score of 85.71%, which is 4.1% higher than the baseline score. We concluded that our models have some predictive capability. Similar methodology and features could be applied to predict other Gene Ontology (GO) terms.

Keywords

Cite

@article{arxiv.1711.00001,
  title  = {Gene Ontology (GO) Prediction using Machine Learning Methods},
  author = {Haoze Wu and Yangyu Zhou},
  journal= {arXiv preprint arXiv:1711.00001},
  year   = {2019}
}

Comments

The results in this paper result from a biased test set, and is therefore not reliable

R2 v1 2026-06-22T22:31:59.299Z