English

From Atoms to Dynamics: Learning the Committor Without Collective Variables

Computational Physics 2025-07-24 v1 Statistical Mechanics Data Analysis, Statistics and Probability

Abstract

This Brief Communication introduces a graph-neural-network architecture built on geometric vector perceptrons to predict the committor function directly from atomic coordinates, bypassing the need for hand-crafted collective variables (CVs). The method offers atom-level interpretability, pinpointing the key atomic players in complex transitions without relying on prior assumptions. Applied across diverse molecular systems, the method accurately infers the committor function and highlights the importance of each heavy atom in the transition mechanism. It also yields precise estimates of the rate constants for the underlying processes. The proposed approach opens new avenues for understanding and modeling complex dynamics, by enabling CV-free learning and automated identification of physically meaningful reaction coordinates of complex molecular processes.

Keywords

Cite

@article{arxiv.2507.17700,
  title  = {From Atoms to Dynamics: Learning the Committor Without Collective Variables},
  author = {Sergio Contreras Arredondo and Chenyu Tang and Radu A. Talmazan and Alberto Megías and Cheng Giuseppe Chen and Christophe Chipot},
  journal= {arXiv preprint arXiv:2507.17700},
  year   = {2025}
}

Comments

32 pages (including supplementary information with 13 pages), 15 figures (5 figures in the main text and 10 figures in the supplementary information)

R2 v1 2026-07-01T04:15:40.108Z