FPCB : a simple and swift strategy for mirror repeat identification
Abstract
After the recent advancement of sequencing strategies, mirror repeats have been found to be present in the gene sequence of many organisms and species. This presence of mirror repeats in most of the sequences indicates towards some important functional role of these repeats. However, a simple and quick strategy to search these repeats in a given sequence is not available. We in this manuscript have proposed a simple and swift strategy named as FPCB strategy to identify mirror repeats in a give sequence. The strategy includes three simple steps of downloading sequencing in FASTA format (F), making its parallel complement (PC) and finally performing a homology search with the original sequence (B). At least twenty genes were analyzed using the proposed study. A number and types of mirror repeats were observed. We have also tried to give nomenclature to these repeats. We hope that the proposed FPCB strategy will be quite helpful for the identification of mirror repeats in DNA or mRNA sequence. Also the strategy may help in unraveling the functional role of mirror repeats in various processes including evolution.
Cite
@article{arxiv.1312.3869,
title = {FPCB : a simple and swift strategy for mirror repeat identification},
author = {Bhardwaj Vikash and Gupta Swapni and Meena Sitaram and Sharma Kulbhushan},
journal= {arXiv preprint arXiv:1312.3869},
year = {2013}
}
Comments
14 pages,3 figures,1 table