English

Forward and Inverse Modelling Approaches for Prediction of Light Stimulus from Electrophysiological Response in Plants

Biological Physics 2014-10-21 v1 Dynamical Systems Applications

Abstract

In this paper, system identification approach has been adopted to develop a novel dynamical model for describing the relationship between light as an environmental stimulus and the electrical response as the measured output for a bay leaf (Laurus nobilis) plant. More specifically, the target is to predict the characteristics of the input light stimulus (in terms of on-off timing, duration and intensity) from the measured electrical response - leading to an inverse problem. We explored two major classes of system estimators to develop dynamical models - linear and nonlinear - and their several variants for establishing a forward and also an inverse relationship between the light stimulus and plant electrical response. The best class of models are given by the Nonlinear Hammerstein-Wiener (NLHW) estimator showing good data fitting results over other linear and nonlinear estimators in a statistical sense. Consequently, a few set of models using different functional variants of NLHW has been developed and their accuracy in detecting the on-off timing and intensity of the input light stimulus are compared for 19 independent plant datasets (including 2 additional species viz. Zamioculcas zamiifolia and Cucumis sativus) under similar experimental scenario.

Keywords

Cite

@article{arxiv.1410.5372,
  title  = {Forward and Inverse Modelling Approaches for Prediction of Light Stimulus from Electrophysiological Response in Plants},
  author = {Shre Kumar Chatterjee and Sanmitra Ghosh and Saptarshi Das and Veronica Manzella and Andrea Vitaletti and Elisa Masi and Luisa Santopolo and Stefano Mancuso and Koushik Maharatna},
  journal= {arXiv preprint arXiv:1410.5372},
  year   = {2014}
}

Comments

25 pages, 14 figures