English

Finding steady-state solutions for ODE systems of zero, first and homogeneous second-order chemical reactions is NP-hard

Computational Complexity 2018-04-11 v2

Abstract

In the context of modeling of cell signaling pathways, a relevant step is finding steady-state solutions for ODE systems that describe the kinetics of a set of chemical reactions, especially sets composed of zero, first, and second-order reactions. To compute a steady-state solution, one must set the left-hand side of each ODE as zero, hence obtaining a system of non-negative, quadratic polynomial equations. If all second-order reactions are homogeneous in respect to their reactants, then the obtained quadratic polynomial equation system will also have univariate monomials. Although it is a well-known fact that finding a root of a quadratic polynomial equation system is a NP-hard problem, it is not so easy to find a readily available proof of NP-hardness for special cases like the aforementioned one. Therefore, we provide here a self-contained proof that finding a root of non-negative, with univariate monomials quadratic polynomial equation system (NUMQ-PES) is NP-hard. This result implies that finding steady-state solutions for ODE systems of zero, first and homogeneous second-order chemical reactions is a NP-hard problem; hence, it is not a feasible approach to approximate non-homogeneous second-order reactions into homogeneous ones.

Keywords

Cite

@article{arxiv.1803.00618,
  title  = {Finding steady-state solutions for ODE systems of zero, first and homogeneous second-order chemical reactions is NP-hard},
  author = {Marcelo S. Reis},
  journal= {arXiv preprint arXiv:1803.00618},
  year   = {2018}
}

Comments

8 pages, 7 references