English

Efficient MedSAMs: Segment Anything in Medical Images on Laptop

Image and Video Processing 2024-12-23 v1 Computer Vision and Pattern Recognition

Abstract

Promptable segmentation foundation models have emerged as a transformative approach to addressing the diverse needs in medical images, but most existing models require expensive computing, posing a big barrier to their adoption in clinical practice. In this work, we organized the first international competition dedicated to promptable medical image segmentation, featuring a large-scale dataset spanning nine common imaging modalities from over 20 different institutions. The top teams developed lightweight segmentation foundation models and implemented an efficient inference pipeline that substantially reduced computational requirements while maintaining state-of-the-art segmentation accuracy. Moreover, the post-challenge phase advanced the algorithms through the design of performance booster and reproducibility tasks, resulting in improved algorithms and validated reproducibility of the winning solution. Furthermore, the best-performing algorithms have been incorporated into the open-source software with a user-friendly interface to facilitate clinical adoption. The data and code are publicly available to foster the further development of medical image segmentation foundation models and pave the way for impactful real-world applications.

Keywords

Cite

@article{arxiv.2412.16085,
  title  = {Efficient MedSAMs: Segment Anything in Medical Images on Laptop},
  author = {Jun Ma and Feifei Li and Sumin Kim and Reza Asakereh and Bao-Hiep Le and Dang-Khoa Nguyen-Vu and Alexander Pfefferle and Muxin Wei and Ruochen Gao and Donghang Lyu and Songxiao Yang and Lennart Purucker and Zdravko Marinov and Marius Staring and Haisheng Lu and Thuy Thanh Dao and Xincheng Ye and Zhi Li and Gianluca Brugnara and Philipp Vollmuth and Martha Foltyn-Dumitru and Jaeyoung Cho and Mustafa Ahmed Mahmutoglu and Martin Bendszus and Irada Pflüger and Aditya Rastogi and Dong Ni and Xin Yang and Guang-Quan Zhou and Kaini Wang and Nicholas Heller and Nikolaos Papanikolopoulos and Christopher Weight and Yubing Tong and Jayaram K Udupa and Cahill J. Patrick and Yaqi Wang and Yifan Zhang and Francisco Contijoch and Elliot McVeigh and Xin Ye and Shucheng He and Robert Haase and Thomas Pinetz and Alexander Radbruch and Inga Krause and Erich Kobler and Jian He and Yucheng Tang and Haichun Yang and Yuankai Huo and Gongning Luo and Kaisar Kushibar and Jandos Amankulov and Dias Toleshbayev and Amangeldi Mukhamejan and Jan Egger and Antonio Pepe and Christina Gsaxner and Gijs Luijten and Shohei Fujita and Tomohiro Kikuchi and Benedikt Wiestler and Jan S. Kirschke and Ezequiel de la Rosa and Federico Bolelli and Luca Lumetti and Costantino Grana and Kunpeng Xie and Guomin Wu and Behrus Puladi and Carlos Martín-Isla and Karim Lekadir and Victor M. Campello and Wei Shao and Wayne Brisbane and Hongxu Jiang and Hao Wei and Wu Yuan and Shuangle Li and Yuyin Zhou and Bo Wang},
  journal= {arXiv preprint arXiv:2412.16085},
  year   = {2024}
}

Comments

CVPR 2024 MedSAM on Laptop Competition Summary: https://www.codabench.org/competitions/1847/