English

Effects of macromolecular crowding on the collapse of biopolymers

Soft Condensed Matter 2016-12-28 v2 Biological Physics Biomolecules

Abstract

Experiments show that macromolecular crowding modestly reduces the size of intrinsically disordered proteins (IDPs) even at volume fraction (ϕ\phi) similar to that in the cytosol whereas DNA undergoes a coil-to-globule transition at very small ϕ\phi. We show using a combination of scaling arguments and simulations that the polymer size Rg(ϕ)\overline{R}_g(\phi) depends on x=Rg(0)/Dx = \overline{R}_g(0)/D where DD is the ϕ\phi-dependent distance between the crowders. If xO(1)x\lesssim \mathcal{O}(1), there is only a small decrease in Rg(ϕ)\overline{R}_g(\phi) as ϕ\phi increases. When xO(1)x\gg \mathcal{O}(1), a cooperative coil-to-globule transition is induced. Our theory quantitatively explains a number of experiments.

Keywords

Cite

@article{arxiv.1409.5663,
  title  = {Effects of macromolecular crowding on the collapse of biopolymers},
  author = {Hongsuk Kang and Philip A. Pincus and Changbong Hyeon and D. Thirumalai},
  journal= {arXiv preprint arXiv:1409.5663},
  year   = {2016}
}

Comments

7 pages 5 figures, accepted in Phys. Rev. Lett