English

$E(3) \times SO(3)$-Equivariant Networks for Spherical Deconvolution in Diffusion MRI

Image and Video Processing 2023-04-14 v1 Computer Vision and Pattern Recognition

Abstract

We present Roto-Translation Equivariant Spherical Deconvolution (RT-ESD), an E(3)×SO(3)E(3)\times SO(3) equivariant framework for sparse deconvolution of volumes where each voxel contains a spherical signal. Such 6D data naturally arises in diffusion MRI (dMRI), a medical imaging modality widely used to measure microstructure and structural connectivity. As each dMRI voxel is typically a mixture of various overlapping structures, there is a need for blind deconvolution to recover crossing anatomical structures such as white matter tracts. Existing dMRI work takes either an iterative or deep learning approach to sparse spherical deconvolution, yet it typically does not account for relationships between neighboring measurements. This work constructs equivariant deep learning layers which respect to symmetries of spatial rotations, reflections, and translations, alongside the symmetries of voxelwise spherical rotations. As a result, RT-ESD improves on previous work across several tasks including fiber recovery on the DiSCo dataset, deconvolution-derived partial volume estimation on real-world \textit{in vivo} human brain dMRI, and improved downstream reconstruction of fiber tractograms on the Tractometer dataset. Our implementation is available at https://github.com/AxelElaldi/e3so3_conv

Keywords

Cite

@article{arxiv.2304.06103,
  title  = {$E(3) \times SO(3)$-Equivariant Networks for Spherical Deconvolution in Diffusion MRI},
  author = {Axel Elaldi and Guido Gerig and Neel Dey},
  journal= {arXiv preprint arXiv:2304.06103},
  year   = {2023}
}

Comments

Accepted to Medical Imaging with Deep Learning (MIDL) 2023. Code available at https://github.com/AxelElaldi/e3so3_conv . 19 pages with 6 figures

R2 v1 2026-06-28T10:03:02.873Z