Biological Physics · Physics
Prototyping Bio-Nanorobots using Molecular Dynamics Simulation
Mustapha Hamdi, Gaurav Sharma, A. Ferreira, Constantinos Mavroidis
2007-08-15
Chemical Physics · Physics
Interactive molecular dynamics in virtual reality from quantum chemistry to drug binding: An open-source multi-person framework
Michael O'Connor, Simon J. Bennie, Helen M. Deeks, Alexander Jamieson-Binnie +6
2019-07-08
Biological Physics · Physics
Dynamic Actuation of DNA-Assembled Plasmonic Nanostructures in Microfluidic Cell-Sized Compartments
Kerstin Goepfrich, Maximilian J. Urban, Christoph Frey, Ilia Platzman +2
2021-05-14
Applied Physics · Physics
Integration of a Synthetic Molecular Motor Into a Rotary DNA Nanostructure: A Framework for Single-Molecule Actuation
Seham Helmi, Erik Benson, Jan Christoph Thiele, Emilie Moulin +2
2025-05-01
Chemical Physics · Physics
Sampling molecular conformations and dynamics in a multi-user virtual reality framework
Michael O Connor, Helen M. Deeks, Edward Dawn, Oussama Metatla +9
2019-01-14
Soft Condensed Matter · Physics
Probing the mechanical properties of DNA nanostructures with metadynamics
W. T. Kaufhold, W. Pfeifer, C. E. Castro, L. Di Michele
2022-03-16
Machine Learning · Computer Science
AI-Guided Molecular Simulations in VR: Exploring Strategies for Imitation Learning in Hyperdimensional Molecular Systems
Mohamed Dhouioui, Jonathan Barnoud, Rhoslyn Roebuck Williams, Harry J. Stroud +2
2025-11-04
Soft Condensed Matter · Physics
Computational method for highly-constrained molecular dynamics of rigid bodies: coarse-grained simulation of auxetic two-dimensional protein crystals
J. A. Campos Gonzalez Angulo, G. Wiesehan, R. F. Ribeiro, J. Yuen-Zhou
2020-06-23
Biomolecules · Quantitative Biology
Probing DNA interactions with proteins using a single-molecule toolbox: inside the cell, in a test tube, and in a computer
Adam J. M. Wollman, Helen Miller, Zhaokun Zhou, Mark C. Leake
2015-04-15
Biomolecules · Quantitative Biology
NNP/MM: Accelerating molecular dynamics simulations with machine learning potentials and molecular mechanic
Raimondas Galvelis, Alejandro Varela-Rial, Stefan Doerr, Roberto Fino +4
2023-08-29
Biological Physics · Physics
DNA Nanostructures Characterized via Dual Nanopore Resensing
Wangwei Dong, Zezhou Liu, Ruiyao Liu, Deborah Kuchnir Fygenson +1
2025-10-21
Distributed, Parallel, and Cluster Computing · Computer Science
DeepDriveMD: Deep-Learning Driven Adaptive Molecular Simulations for Protein Folding
Hyungro Lee, Heng Ma, Matteo Turilli, Debsindhu Bhowmik +2
2019-09-18