Quantitative Methods · Quantitative Biology
Investigation of the impact of PTMs on the protein backbone conformation
Pierrick Craveur, Tarun Narwani, Joseph Rebehmed, Alexandre de Brevern
2019-08-15
Cell Behavior · Quantitative Biology
Thresholds, long delays and stability from generalized allosteric effect in protein networks
Roberto Chignola, Chiara Dalla Pellegrina, Alessio Del Fabbro, Edoardo Milotti
2009-11-13
Biological Physics · Physics
Thiol post-translational modifications modulate allosteric regulation of the OpcA-G6PDH complex through conformational gate control
Hoshin Kim, Song Feng, Pavlo Bohutskyi, Xiaolu Li +4
2025-07-30
Quantitative Methods · Quantitative Biology
A Brief Review of Machine Learning Techniques for Protein Phosphorylation Sites Prediction
Farzaneh Esmaili, Mahdi Pourmirzaei, Shahin Ramazi, Elham Yavari
2022-02-08
Quantitative Methods · Quantitative Biology
A Review of Machine Learning and Algorithmic Methods for Protein Phosphorylation Sites Prediction
Farzaneh Esmaili, Mahdi Pourmirzaei, Shahin Ramazi, Seyedehsamaneh Shojaeilangari +1
2022-08-10
Machine Learning · Computer Science
MeToken: Uniform Micro-environment Token Boosts Post-Translational Modification Prediction
Cheng Tan, Zhenxiao Cao, Zhangyang Gao, Lirong Wu +5
2024-11-05
Computational Engineering, Finance, and Science · Computer Science
Learning the PTM Code through a Coarse-to-Fine, Mechanism-Aware Framework
Jingjie Zhang, Hanqun Cao, Zijun Gao, Yu Wang +7
2025-10-28
Biological Physics · Physics
A Curated Rotamer Library for Common Post-Translational Modifications of Proteins
Oufan Zhang, Shubhankar A. Naik, Zi Hao Liu, Julie Forman-Kay +1
2024-05-07
Quantitative Methods · Quantitative Biology
Improving PTM Site Prediction by Coupling of Multi-Granularity Structure and Multi-Scale Sequence Representation
Zhengyi Li, Menglu Li, Lida Zhu, Wen Zhang
2024-01-19
Biomolecules · Quantitative Biology
Side-chain conformational changes upon protein-protein association
Anatoly M. Ruvinsky, Tatsiana Kirys, Alexander V. Tuzikov, Ilya A. Vakser
2010-10-15
Soft Condensed Matter · Physics
Mechanical response to tension and torque of molecular chains via statistically interacting particles associated with extension, contraction, twist, and supercoiling
Aaron C. Meyer, Michael Karbach, Ping Lu, Gerhard Müller
2022-06-15
Biomolecules · Quantitative Biology
Manipulation of conformational change in proteins by single residue perturbations
C Atilgan, Z N Gerek, S B Ozkan, A R Atilgan
2015-05-18
Biomolecules · Quantitative Biology
Protein multi-scale organization through graph partitioning and robustness analysis: Application to the myosin-myosin light chain interaction
Antoine Delmotte, Edward W Tate, Sophia N Yaliraki, Mauricio Barahona
2011-09-21
Genomics · Quantitative Biology
High fidelity epigenetic inheritance: Information theoretic model predicts $k$-threshold filling of histone modifications post replication
Nithya Ramakrishnan, Sibi Raj B Pillai, Ranjith Padinhateeri
2020-05-15
Biomolecules · Quantitative Biology
Bi-TEAM: A Unified Cross-Scale Representation Learning Framework for Chemically Modified Biomolecules
Chunbin Gu, Zijun Gao, Mutian He, Jingjie Zhang +7
2026-03-03
Genomics · Quantitative Biology
The proteomic to biology inference, a frequently overlooked concern in the interpretation of proteomic data: A plea for functional validation
Thierry Rabilloud, Pierre Lescuyer
2014-03-24