English

Crystallization and melting of bacteria colonies and Brownian Bugs

Statistical Mechanics 2009-11-13 v1

Abstract

Motivated by the existence of remarkably ordered cluster arrays of bacteria colonies growing in Petri dishes and related problems, we study the spontaneous emergence of clustering and patterns in a simple nonequilibrium system: the individual-based interacting Brownian bug model. We map this discrete model into a continuous Langevin equation which is the starting point for our extensive numerical analyses. For the two-dimensional case we report on the spontaneous generation of localized clusters of activity as well as a melting/freezing transition from a disordered or isotropic phase to an ordered one characterized by hexagonal patterns. We study in detail the analogies and differences with the well-established Kosterlitz-Thouless-Halperin-Nelson-Young theory of equilibrium melting, as well as with another competing theory. For that, we study translational and orientational correlations and perform a careful defect analysis. We find a non standard one-stage, defect-mediated, transition whose nature is only partially elucidated.

Keywords

Cite

@article{arxiv.0710.1771,
  title  = {Crystallization and melting of bacteria colonies and Brownian Bugs},
  author = {Francisco Ramos and Cristobal Lopez and E. Hernandez-Garcia and Miguel A. Munoz},
  journal= {arXiv preprint arXiv:0710.1771},
  year   = {2009}
}

Comments

13 Figures. 14 pages. Submitted to Phys. Rev. E