Covering Sequences for $\ell$-Tuples
Abstract
de Bruijn sequences of order , i.e., sequences that contain each -tuple as a window exactly once, have found many diverse applications in information theory and most recently in DNA storage. This family of binary sequences has rate of . To overcome this low rate, we study -tuples covering sequences, which impose that each -tuple appears at least once as a window in the sequence. The cardinality of this family of sequences is analyzed while assuming that is a function of the sequence length . Lower and upper bounds on the asymptotic rate of this family are given. Moreover, we study an upper bound for such that the redundancy of the set of -tuples covering sequences is at most a single symbol. Lastly, we present efficient encoding and decoding schemes for -tuples covering sequences that meet this bound.
Cite
@article{arxiv.2206.03711,
title = {Covering Sequences for $\ell$-Tuples},
author = {Sagi Marcovich and Tuvi Etzion and Eitan Yaakobi},
journal= {arXiv preprint arXiv:2206.03711},
year = {2022}
}