Quantitative Methods · Quantitative Biology
A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: the PRED-TMR algorithm
Claude Pasquier, Vasilis Promponas, Giorgos Palaios, Ioannis Hamodrakas +1
2016-05-10
Machine Learning · Computer Science
Attending on Multilevel Structure of Proteins enables Accurate Prediction of Cold-Start Drug-Target Interactions
Ziying Zhang, Yaqing Wang, Yuxuan Sun, Min Ye +1
2025-10-07
Molecular Networks · Quantitative Biology
ComPPI, a cellular compartment-specific database for protein-protein interaction network analysis
Daniel V. Veres, David M. Gyurko, Benedek Thaler, Kristof Z. Szalay +3
2015-01-14
Computation and Language · Computer Science
From Literature to Hypotheses: An AI Co-Scientist System for Biomarker-Guided Drug Combination Hypothesis Generation
Raneen Younis, Suvinava Basak, Lukas Chavez, Zahra Ahmadi
2026-03-03
Other Quantitative Biology · Quantitative Biology
TOPO: Improving remote homologue recognition via identifying common protein structure framework
Jianwei Zhu, Haicang Zhang, Chao Wang, Bin Ling +2
2015-07-14
Machine Learning · Computer Science
SCMPPI: Supervised Contrastive Multimodal Framework for Predicting Protein-Protein Interactions
Shengrui XU, Tianchi Lu, Zikun Wang, Jixiu Zhai
2025-04-29
Machine Learning · Computer Science
COMET:Combined Matrix for Elucidating Targets
Haojie Wang, Zhe Zhang, Haotian Gao, Xiangying Zhang +6
2025-01-03
Biomolecules · Quantitative Biology
CoPRA: Bridging Cross-domain Pretrained Sequence Models with Complex Structures for Protein-RNA Binding Affinity Prediction
Rong Han, Xiaohong Liu, Tong Pan, Jing Xu +7
2025-01-06
Biomolecules · Quantitative Biology
MCPI: Integrating Multimodal Data for Enhanced Prediction of Compound Protein Interactions
Li Zhang, Wenhao Li, Haotian Guan, Zhiquan He +2
2023-06-16
Quantitative Methods · Quantitative Biology
Improving PTM Site Prediction by Coupling of Multi-Granularity Structure and Multi-Scale Sequence Representation
Zhengyi Li, Menglu Li, Lida Zhu, Wen Zhang
2024-01-19
Systems and Control · Computer Science
CHOPtrey: contextual online polynomial extrapolation for enhanced multi-core co-simulation of complex systems
Abir Ben Khaled-El Feki, Laurent Duval, Cyril Faure, Daniel Simon +1
2017-03-03
Computational Engineering, Finance, and Science · Computer Science
A survey of computational methods for protein complex prediction from protein interaction networks
Sriganesh Srihari, Hon Wai Leong
2012-11-27
Machine Learning · Computer Science
An Integrated Deep-Learning Framework for Peptide-Protein Interaction Prediction and Target-Conditioned Peptide Generation with ConGA-PepPI and TC-PepGen
Chupei Tang, Junxiao Kong, Moyu Tang, Di Wang +4
2026-04-28
Biomolecules · Quantitative Biology
Structural Property Prediction
Maurits Dijkstra, Punto Bawono, Isabel Houtkamp, Jose Gavaldá-Garciá +7
2023-09-07
Biomolecules · Quantitative Biology
HelixFold-Multimer: Elevating Protein Complex Structure Prediction to New Heights
Xiaomin Fang, Jie Gao, Jing Hu, Lihang Liu +3
2024-05-20
Computer Vision and Pattern Recognition · Computer Science
Motion Prediction via Joint Dependency Modeling in Phase Space
Pengxiang Su, Zhenguang Liu, Shuang Wu, Lei Zhu +2
2022-01-10