English

Consistent treatment of hydrophobicity in protein lattice models accounts for cold denaturation

Soft Condensed Matter 2016-03-23 v2 Biological Physics Biomolecules

Abstract

The hydrophobic effect stabilizes the native structure of proteins by minimizing the unfavourable interactions between hydrophobic residues and water through the formation of a hydrophobic core. Here we include the entropic and enthalpic contributions of the hydrophobic effect explicitly in an implicit solvent model. This allows us to capture two important effects: a length-scale dependence and a temperature dependence for the solvation of a hydrophobic particle. This consistent treatment of the hydrophobic effect explains cold denaturation and heat capacity measurements of solvated proteins.

Keywords

Cite

@article{arxiv.1511.06590,
  title  = {Consistent treatment of hydrophobicity in protein lattice models accounts for cold denaturation},
  author = {Erik van Dijk and Patrick Varilly and Tuomas Knowles and Daan Frenkel and Sanne Abeln},
  journal= {arXiv preprint arXiv:1511.06590},
  year   = {2016}
}

Comments

Added and corrected references for design procedure in main text (p. 2) and in Supplemental Information (p. 8)