English

Conformations, Transverse Fluctuations and Crossover Dynamics of a Semi-Flexible Chain in Two Dimensions

Biological Physics 2015-06-18 v2 Soft Condensed Matter

Abstract

We present a unified scaling description for the dynamics of monomers of a semiflexible chain under good solvent condition in the free draining limit. We consider both the cases where the contour length LL is comparable to the persistence length p\ell_p and the case LpL\gg \ell_p. Our theory captures the early time monomer dynamics of a stiff chain characterized by t3/4t^{3/4} dependence for the mean square displacement(MSD) of the monomers, but predicts a first crossover to the Rouse regime of t2ν/1+2νt^{2\nu/{1+2\nu}} for τ1p3\tau_1 \sim \ell_p^3, and a second crossover to the purely diffusive dynamics for the entire chain at τ2L5/2\tau_2 \sim L^{5/2}. We confirm the predictions of this scaling description by studying monomer dynamics of dilute solution of semi-flexible chains under good solvent conditions obtained from our Brownian dynamics (BD) simulation studies for a large choice of chain lengths with number of monomers per chain N = 16 - 2048 and persistence length p=1500\ell_p = 1 - 500 Lennard-Jones (LJ) units. These BD simulation results further confirm the absence of Gaussian regime for a 2d swollen chain from the slope of the plot of RN2/2LpL/p\langle R_N^2 \rangle/2L \ell_p \sim L/\ell_p which around L/p1L/\ell_p \sim 1 changes suddenly from (L/p)(L/p)0.5\left(L/\ell_p \right) \rightarrow \left(L/\ell_p \right)^{0.5} , also manifested in the power law decay for the bond autocorrelation function disproving the validity of the WLC in 2d. We further observe that the normalized transverse fluctuations of the semiflexible chains for different stiffness l2/L\sqrt{\langle l_{\bot}^2\rangle}/L as a function of renormalized contour length L/pL/\ell_p collapse on the same master plot and exhibits power law scaling l2/L(L/p)η\sqrt{\langle l_{\bot}^2\rangle}/L \sim (L/\ell_p)^\eta at extreme limits, where η=0.5\eta = 0.5 for extremely stiff chains (L/p1L/\ell_p \gg 1), and η=0.25\eta = -0.25 for fully flexible chains.

Keywords

Cite

@article{arxiv.1401.8247,
  title  = {Conformations, Transverse Fluctuations and Crossover Dynamics of a Semi-Flexible Chain in Two Dimensions},
  author = {Aiqun Huang and Aniket Bhattacharya and Kurt Binder},
  journal= {arXiv preprint arXiv:1401.8247},
  year   = {2015}
}

Comments

14 pages, 18 figures