Conformations of Linear DNA
Soft Condensed Matter
2009-10-28 v1 q-bio
Abstract
We examine the conformations of a model for under- and overwound DNA. The molecule is represented as a cylindrically symmetric elastic string subjected to a stretching force and to constraints corresponding to a specification of the link number. We derive a fundamental relation between the Euler angles that describe the curve and the topological linking number. Analytical expressions for the spatial configurations of the molecule in the infinite- length limit were obtained. A unique configuraion minimizes the energy for a given set of physical conditions. An elastic model incorporating thermal fluctuations provides excellent agreement with experimental results on the plectonemic transition.
Keywords
Cite
@article{arxiv.cond-mat/9610126,
title = {Conformations of Linear DNA},
author = {Boris Fain and Joseph Rudnick and Stellan Ostlund},
journal= {arXiv preprint arXiv:cond-mat/9610126},
year = {2009}
}
Comments
5 pages, RevTeX; 6 postscript figures