English

Conformations of Linear DNA

Soft Condensed Matter 2009-10-28 v1 q-bio

Abstract

We examine the conformations of a model for under- and overwound DNA. The molecule is represented as a cylindrically symmetric elastic string subjected to a stretching force and to constraints corresponding to a specification of the link number. We derive a fundamental relation between the Euler angles that describe the curve and the topological linking number. Analytical expressions for the spatial configurations of the molecule in the infinite- length limit were obtained. A unique configuraion minimizes the energy for a given set of physical conditions. An elastic model incorporating thermal fluctuations provides excellent agreement with experimental results on the plectonemic transition.

Keywords

Cite

@article{arxiv.cond-mat/9610126,
  title  = {Conformations of Linear DNA},
  author = {Boris Fain and Joseph Rudnick and Stellan Ostlund},
  journal= {arXiv preprint arXiv:cond-mat/9610126},
  year   = {2009}
}

Comments

5 pages, RevTeX; 6 postscript figures

R2 v1 2026-07-22T11:54:59.294Z