English

Confinement determines transport of a reaction-diffusion active matter front

Soft Condensed Matter 2024-12-09 v2 Biological Physics

Abstract

Couplings between biochemical and mechanical processes have a profound impact on embryonic development. However, in-vitro studies capable of quantifying these interactions have remained elusive. Here, we investigate a synthetic system where a DNA reaction-diffusion (RD) front is advected by a turbulent flow generated by active matter (AM) flows in a quasi-one-dimensional geometry. Whereas the dynamics of simple RD fronts solely depend on the reaction and diffusion rates, we show that RD-AM front propagation is also influenced by the confinement geometry. We first experimentally dissected the different components of the reaction-diffusion-advection process by knocking out reaction or advection and observed how RD-AM allows for faster transport over large distances, avoiding dilution. We then show how confinement impacts active matter flow: while changes in instantaneous flow velocities are small; correlation times are dramatically increased with decreasing confinement. As a result, RD-AM front speed increased up to 8-fold compared to a RD one, in quantitative agreement with a conveyor belt RDA theoretical model. The RD-AM experimental system described here provides a framework for the rational engineering of complex spatiotemporal processes observed in living systems. It will reinforce our understanding of how macro-scale patterns and structures emerge from microscopic components in non-equilibrium systems.

Keywords

Cite

@article{arxiv.2401.06674,
  title  = {Confinement determines transport of a reaction-diffusion active matter front},
  author = {Nicolas Lobato-Dauzier and Ananyo Maitra and André Estevez-Torres and Jean-Christophe Galas},
  journal= {arXiv preprint arXiv:2401.06674},
  year   = {2024}
}

Comments

Addition of a conveyor belt reaction- diffusion-advection (RDA) model, see Fig. 5. Addition of Fig. 6 showing the agreement between the model and experimental results, with additional replicates

R2 v1 2026-06-28T14:15:24.457Z