Computational TIRF enables optical sectioning beyond the evanescent field for widefield fluorescence microscopy
Abstract
The resolving ability of widefield fluorescence microscopy is fundamentally limited by out-of-focus background owing to its low axial resolution, particularly for densely labeled biological samples. Although total internal reflection fluorescence (TIRF) microscopy provides strong near-surface sectioning, they are intrinsically restricted to shallow imaging depths. Here we present computational TIRF (cTIRF), a deep learning-based imaging modality that generates TIRF-like sectioned images directly from conventional widefield epifluorescence measurements without any optical modification. By integrating a physics-informed forward model into network training, cTIRF achieves effective background suppression and axial resolution enhancement while maintaining consistency with the measured widefield data. We demonstrate that cTIRF recovers near-surface structures with performance comparable to experimental TIRF, and further enables both single-frame and volumetric sectioned reconstruction in densely labeled samples where conventional TIRF fails. This work establishes cTIRF as a practical and deployable alternative to hardware-based optical sectioning in fluorescence microscopy, enabled by rapid adaptation to new imaging systems with minimal calibration data.
Cite
@article{arxiv.2511.06853,
title = {Computational TIRF enables optical sectioning beyond the evanescent field for widefield fluorescence microscopy},
author = {Qiushi Li and Celi Lou and Yanfang Cheng and Bilang Gong and Xinlin Chen and Hao Chen and Baowan Li and Jieli Wang and Yulin Wang and Sipeng Yang and Yunqing Tang and Luru Dai},
journal= {arXiv preprint arXiv:2511.06853},
year = {2026}
}