English

Competition between self-assembly and phase separation governs high-temperature condensation of a DNA liquid

Soft Condensed Matter 2024-07-31 v2 Biological Physics

Abstract

In many biopolymer solutions, attractive interactions that stabilize finite-sized clusters at low concentrations also promote phase separation at high concentrations. Here we study a model biopolymer system that exhibits the opposite behavior: Self-assembly of DNA oligonucleotides into finite-sized, stoichiometric clusters, known as "DNA nanostars", tends to inhibit phase separation of the oligonucleotides at high temperatures. We use microfluidics-based experiments to map the phase behavior of DNA nanostars at high concentrations of divalent cations, revealing a novel phase transition in which the oligonucleotides condense upon increasing temperature. We then show that a theoretical model of competition between self-assembly and phase separation quantitatively predicts changes in experimental phase diagrams arising from DNA sequence perturbations. Our results point to a general mechanism by which self-assembly shapes phase boundaries in complex biopolymer solutions.

Keywords

Cite

@article{arxiv.2301.06134,
  title  = {Competition between self-assembly and phase separation governs high-temperature condensation of a DNA liquid},
  author = {Omkar Hegde and Tianhao Li and Anjali Sharma and Marco Borja and William M. Jacobs and W. Benjamin Rogers},
  journal= {arXiv preprint arXiv:2301.06134},
  year   = {2024}
}

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