English

Characterizing Open-Ended Evolution Through Undecidability Mechanisms in Random Boolean Networks

Populations and Evolution 2026-05-27 v3

Abstract

Discrete dynamical models underpin systems biology, but we still lack substrate-agnostic diagnostics for identifying finite-horizon dynamical signatures that may be relevant to open-ended evolution (OEE), such as the recurrent production of novel phenotypic states rather than rapid settling or unstructured noise. We introduce a simple, model-independent metric, {\Omega}, that summarizes the residence-time-weighted contribution of attractor cycle lengths across the sequence of recurrent episodes realized within a finite observation window. {\Omega} is zero for single-attractor dynamics and also vanishes for pure novelty without recurrence, while increasing when trajectories repeatedly enter multiple persistent cyclic phenotypes. Using Random Boolean Networks (RBNs) as a controlled testbed, we compare classical Boolean dynamics with biologically motivated non-classical mechanisms (probabilistic context switching, annealed rule mutation, paraconsistent logic, modal necessary/possible gating, and quantum-inspired superposition/paired-state coupling) under homogeneous and heterogeneous updating schemes. Our results support the view that undecidability-adjacent, state-dependent mechanisms -- implemented as probabilistic context switching, modal necessity/possibility gating, paraconsistent logic, or quantum-inspired correlated branching -- are enabling conditions for sustained novelty. At the end of our manuscript we outline a practical extension of {\Omega} to continuous/hybrid state spaces, positioning {\Omega} as a portable proxy for OEE in biological modeling and a guide for engineering evolvable synthetic circuits.

Keywords

Cite

@article{arxiv.2512.15534,
  title  = {Characterizing Open-Ended Evolution Through Undecidability Mechanisms in Random Boolean Networks},
  author = {Amahury J. López-Díaz and Pedro Juan Rivera Torres and Gerardo L. Febres and Carlos Gershenson},
  journal= {arXiv preprint arXiv:2512.15534},
  year   = {2026}
}

Comments

16 pages, 2 figures; code and SM available at GitHub repo; submitted for publication to npj Systems Biology and Applications

R2 v1 2026-07-01T08:29:24.729Z